FUNDACIÓN  PARA LA CONSERVACIÓN DE LA BIODIVERSIDAD ACUÁTICA Y TERRESTRE (FUCOBI)
  • FUCOBI
    • Quienes somos
    • Objetivos
    • Miembros de FUCOBI
    • Galería
  • Becas
    • Proyectos para Estudiantes
  • UNA SALUD/ ONE HEALTH
    • mangroveENCODE >
      • Metilación de ADN y adaptación al estrés de salinidad.
      • Biodiversidad de Manglares de Ecuador
      • Proyecto sobre la Absorción de CO2 por los Manglares
      • Químicos Perturbadores Endócrinos (EDCs) en Manglares
    • shrimpENCODE >
      • Biodiversidad y Diversidad Genética del Camarón
      • TSV en Camarón
      • WSSV en Camarón
      • IHHNV en Camarón
      • Alérgenos de Camarón
      • Metales / Cadmio en Camarón
      • Biodiversidad y Diversidad Genética Pescado
      • Diversidad Genética de la Concha
      • Diversidad Genética del Cangrejo
      • Proyecto de Epigénoma del Camarón
      • Quimicos Perturbadores Endocrinos / EDCs en Camarón
    • childrenENCODE >
      • Shrimp Scampi
      • Somos lo que Comemos
      • Malformaciones Congénitas (Metales y COPs)
      • Diabetes y EDCs (metales y COPs)
      • Cancer y EDCs (metales y COPs)
      • Aprenda sobre los Contaminantes que afectan a las Personas
      • Genes que causan Alergias en Humanos
      • Resistencia a Antibióticos y la Industria Avícola
  • Contacto
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PUBLICACIONES

En esta sección podrá consultar todas las publicaciones en las que
participa FUCOBI

posters DE reuniones de UNA SALUD/ONE HEALTH:
UNA SALUD / ONE HEALTH MEETING POSTERS

2017 (FRAMINGHAM, MA)

Status of Mangrove Forests in Honduras
poster_status_of_mangroves_in_honduras_mira_maude_chouinard.pdf
File Size: 5999 kb
File Type: pdf
Download File

Status of mangrove forests in Sinaloa, Mexico
poster_status_of_mangroves_forests_sinaloa_ruiz-luna.pdf
File Size: 1809 kb
File Type: pdf
Download File

How is shrimp farming impacting mangrove ecosystems in the Indo-Pacific?
poster_frank_david_-_how_is_shrimp_farming_impacting_mangroves_ecosustems_in_the_indo_paci_fic._framingham_2017.pdf
File Size: 1750 kb
File Type: pdf
Download File

2018 (SEATTLE, WA)

Environmental, animal and public health effects of diesel: a photovoltaic renewable energy as an alternative to the conventional diesel system to pump water in shrimp farms of Ecuador focused on reducing carbon dioxide emissions
poster_genesis_solorzano_lis_herrerafinal.-comprimido.pdf
File Size: 553 kb
File Type: pdf
Download File

2019 (NEW ORLEANS, LA) 

Microbial communities from mangroves soil and the influence of conversion to shrimp ponds on carbon stock and greenhouse gas emissions
poster_marcus_brazil.microbial_commun_mangroves__2_.pptx
File Size: 730 kb
File Type: pptx
Download File

Role of PirBvp lectin and PirAvp toxin of Vibrio parahaemolyticus to promote the Acute Hepatopancreatic Necrosis Disease (AHPND) in shrimp via glycosylation-dependent PirBvp-receptor interactions
poster_-_marcelo_victorio-de_los_santos-was2019.pdf
File Size: 1539 kb
File Type: pdf
Download File

Gene body methylation plays a homeostatic role in stress adaption of extremophiles
nsa_2019_new_orleans_chenyiping_china_mangrove_gene_body_methylation.pdf
File Size: 4394 kb
File Type: pdf
Download File

2019 (Massachusetts)

A fossilized White Spot Syndrome Virus-like element (DNAV-1_LVa) in the genome of the original specific pathogen-free (SPF) shrimp Penaeus (Litopenaeus) vannamei domesticated by the breeding program of the U.S. Marine Shrimp Farming Program (USMSFP) from Hawaii, USA
poster_weidong_bao_acacia_et_al_-_dnav-1_lva_wssv-like.2019_conference_in_woods_hole_ma.pdf
File Size: 1474 kb
File Type: pdf
Download File

2020-2021 (BALTIMORE,MD / CHARLOTTE, NC)

The FUCOBI Foundation contributed to a recent publication by our collaborator, Dr. Acacia Alcivar-Warren. The results are part of ‘The Shrimp Epigenome (ShrimpENCODE) Project’ of FUCOBI’s program ‘UNA SALUD / ONE HEALTH Epigenomics and Microbiomes: Somos lo que comemos / We are what we eat’

Bao W, Tang KFJ, Alcivar-Warren A. 2020. The Complete Genome of an Endogenous Nimavirus (Nimav-1_LVa) From the Pacific Whiteleg Shrimp Penaeus (Litopenaeus) Vannamei. Genes (Basel). 2020 Jan 14;11(1). pii: E94. doi: 10.3390/genes11010094.
Author information
Bao W1, Tang KFJ2, Alcivar-Warren A3,4.
1 Genetic Information Research Institute (GIRI), 20380 Town Center Lane, Suite 240, Cupertino, CA 95014, USA.
2 Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 106 Nanjing Road, Qingdao 266071, China.
3 Fundación para la Conservation de la Biodiversidad Acuática y Terrestre (FUCOBI), Quito EC1701, Ecuador.
4 Environmental Genomics Inc. (EGI), ONE HEALTH Epigenomics Educational Initiative, P. O. Box 196, Southborough, MA 01772, USA
.
Abstract
​

White spot syndrome virus (WSSV), the lone virus of the genus Whispovirus under the family Nimaviridae, is one of the most devastating viruses affecting the shrimp farming industry. Knowledge about this virus, in particular, its evolution history, has been limited, partly due to its large genome and the lack of other closely related free-living viruses for comparative studies. In this study, we reconstructed a full-length endogenous nimavirus consensus genome, Nimav-1_LVa (279,905 bp), in the genome sequence of Penaeus (Litopenaeus) vannamei breed Kehai No. 1 (ASM378908v1). This endogenous virus seemed to insert exclusively into the telomeric pentanucleotide microsatellite (TAACC/GGTTA)n. It encoded 117 putative genes, with some containing introns, such as g012 (inhibitor of apoptosis, IAP), g046 (crustacean hyperglycemic hormone, CHH), g155 (innexin), g158 (Bax inhibitor 1 like). More than a dozen Nimav-1_LVa genes are involved in the pathogen-host interactions. We hypothesized that g046, g155, g158, and g227 (semaphorin 1A like) were recruited host genes for their roles in immune regulation. Sequence analysis indicated that a total of 43 WSSV genes belonged to the ancestral/core nimavirus gene set, including four genes reported in this study: wsv112 (dUTPase), wsv206, wsv226, and wsv308 (nucleocapsid protein). The availability of the Nimav-1_LVa sequence would help understand the genetic diversity, epidemiology, evolution, and virulence of WSSV.

Important information for the shrimp aquaculture industry worldwide: availability of a differential diagnostic tool useful for international trade certification and OIE regulations

Through a partnership with EGI and GIRI, we are helping to develop a diagnostic tool to differentiate the infectious WSSV virus from the non-infectious endogenous nimavirus (previously called DNAV-1_LVa and WSSV-EVE). This differential diagnostics tool will be valuable to the shrimp aquaculture industry worldwide for international trade health certification and compliance with OIE regulations.

otras publicaciones de la dra. alcivar warren y colaboradores de fucobi 

OTHER PUBLICATIONS BY DR. ALCIVAR-WARREN AND FUCOBI COLLABORATORS ​
Peer-reviewed publications:
​

Zhang X, Yuan J, Sun Y, Li S, Gao Y, Yu Y, Liu C, Wang Q, Lv X, Zhang X, Ma KY, Wang X, Lin W, Wang L, Zhu X, Zhang C, Zhang J, Jin S, Yu K, Kong J, Xu P, Chen J, Zhang H, Sorgeloos P, Sagi A, Alcivar-Warren A, Liu Z, Wang L, Ruan J, Chu KH, Liu B, Li F, Xiang J. Penaeid shrimp genome provides insights into benthic adaptation and frequent molting. Nat Commun. 2019 Jan 21;10(1):356. doi: 10.1038/s41467-018-08197-4.
 
Aquaculture Genomics, Genetics and Breeding Workshop, Abdelrahman H, ElHady M, Alcivar-Warren A, Allen S, Al-Tobasei R, Bao L, Beck B, Blackburn H, Bosworth B, Buchanan J, Chappell J, Daniels W, Dong S, Dunham R, Durland E, Elaswad A, Gomez-Chiarri M, Gosh K, Guo X, et al. 2017. Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research. BMC Genomics. 2017 Feb 20;18(1):191. doi: 10.1186/s12864-017-3557-1. Review. Erratum in: BMC Genomics. 2017 Mar 16;18(1):235.
 
Alcivar-Warren A., Meehan-Meola D., Park S. W., Xu Z., Delaney M., Zuniga G. (2007). ShrimpMap: A low-density, microsatellite-based linkage map of the pacific whiteleg shrimp, Litopenaeus vannamei: Identification of sex-linked markers in linkage group 4. J. Shellfish Res. 26, 1259–1277.
 
Alcivar-Warren A., Xu Z., Meehan D., Zuniga G., Bell K. (2003). Over 150 polymorphic microsatellite markers available for parentage testing, pedigree tracing, genetic diversity and genome mapping of the Pacific White Shrimp, Penaeus (Litopenaeus) vannamei, in Aquaculture America (Louisville, KY: ).
 
Alcivar-Warren A, Meehan-Meola D, Wang Y, Guo X, Zhou L, Xiang J, Moss S, Arce S, Warren W, Xu Z, Bell K. 2006. Isolation and Mapping of Telomeric Pentanucleotide (TAACC)n Repeats of the Pacific Whiteleg Shrimp, Penaeus vannamei, Using Fluorescence In Situ Hybridization. Mar Biotechnol (NY) 8(5):467–480. doi: 10.1007/s10126-005-6031-z. Erratum in: Mar Biotechnol (NY). 2006 Nov-Dec;8(6):697-8.
 
Reville, C., Al-Beik, J., Meehan-Meola, D., Xu, Z., Goldsmith, M.L., Rand, W. and Alcivar-Warren, A. 2005. White Spot Syndrome Virus in Frozen Shrimp Sold at Massachusetts Supermarkets. J. Shellfish Res. 24 (1), 285-290.
 
Alcivar-Warren A, Overstreet RM, Dhar AK, Astrofsky K, Carr WH, Sweeney J, Lotz JM. Genetic susceptibility of cultured shrimp (Penaeus vannamei) to infectious hypodermal and hematopoietic necrosis virus and Baculovirus penaei: possible relationship with growth status and metabolic gene expression. J Invertebr Pathol. 1997;70(3):190–197. doi: 10.1006/jipa.1997.4692.
 
Alcivar-Warren A, Trasler JM, Awoniyi CA, Zirkin BR, Hecht NB. 1996. Differential expression of ornithine decarboxylase, poly(ADP)ribose polymerase, and mitochondrial mRNAs following testosterone administration to hypophysectomized rats.Mol Reprod Dev. 1996 Mar;43(3):283-9.
 
Dhar AK, Thompson MS, Paradis MR, Alcivar-Warren A. 2000. Determination of the cDNA sequence and mRNA expression of interleukin-1 receptor antagonist in horses. Am J Vet Res. 2000 Aug;61(8):920-4.
 
Eaton JK, Alcivar-Warren A, Kenny JE. 2012. Multidimensional fluorescence fingerprinting for classification of shrimp by location and species. Environ Sci Technol. 2012 Feb 21;46(4):2276-82. doi: 10.1021/es2037542. Epub 2012 Feb 9.
 
Garcia DK., Faggart MA., Rhoades L., Alcivar-Warren AA, Wyban JA, Carr WH, Sweeney JN, Ebert KM. 1994. Genetic diversity of cultured Penaeus vannamei shrimp using three molecular genetic techniques. Mol. Mar. Biol. Biotechnol. 3, 270–280.
 
Garcia DK, Dhar AK, Alcivar-Warren A. 1996. Molecular analysis of a RAPD marker (B20) reveals two microsatellites and differential mRNA expression in Penaeus vannamei. Mol Mar Biol Biotechnol. 1996 Mar;5(1):71-83.
 
Jue K, Benoit G, Alcivar-Warren AA, Trasler JM. 1995. Developmental and hormonal regulation of DNA methyltransferase in the rat testis. Biol Reprod. 1995 Jun;52(6):1364-71.
 
Meehan D, Xu Z, Zuniga G, Alcivar-Warren A. 2003. High frequency and large number of polymorphic microsatellites in cultured shrimp, Penaeus (Litopenaeus) vannamei [Crustacea:Decapoda]. Mar Biotechnol (NY). 2003 Jul-Aug;5(4):311-30.
 
Pascual I, Dhar AK, Fan Y, Paradis MR, Arruga MV, Alcivar-Warren A. 2002. Isolation of expressed sequence tags from a Thoroughbred horse (Equus caballus) 5'-RACE cDNA library. Anim Genet. 2002 Jun;33(3):231-2.
 
Xu Z, Dhar AK, Wyrzykowski J, Alcivar-Warren A. 1888. Identification of abundant and informative microsatellites from shrimp (Penaeus monodon) genome. Anim Genet. 1999 Apr;30(2):150-6.
 
Xu Z., Primavera J. H., de la Pena L. D., Pettit P., Belak J., Alcivar-Warren A.  2001. Genetic diversity of wild and cultured black tiger shrimp (Penaeus monodon) in the Philippines using microsatellites. Aquaculture 199, 13–40. 
 

Abstracts presented at ‘The Shrimp Epigenome (ShrimpENCODE) sessions and ‘ONE HEALTH Epigenomics and Microbiomes: From Soil to People’ workshops,co-chaired by Dr. Acacia Alcivar-Warren and Dr. Kathy Tang, at the annual meetings of the National Shellfisheries Association (NSA) from 2018 to 2020 (https://www.shellfish.org/publications-resources-public):
 
110th Annual Meeting, Seattle, Washington, March 2018 (this is not a citeable document)
111th Annual Meeting, New Orleans, Louisiana (Triennial), February 2019 available soon
112th Annual Meeting, Baltimore, Maryland (cancelled), March/April 2020 (this is not a citeable document)

PUBLICACIONES 2003 -2007

PUBLICATION 2003-2007

Characterization of 35 new microsatellite genetic markers for the Pacific whiteleg shrimp, litopenaeus vannamei: their usefulness for Studying genetic diversity of wild and cultured stocks, tracing Pedigree in breeding programs, and linkage mapping proyecto UNSA SALUD / ONE HEALTH

Publicado en Journal of Shellfish Research, Vol. 26, 2007
Imagen

Characterization and Mapping of Expressed Sequence Tags Isolated from a Subtracted Cdna Library Of Litopenaeus Vannamei Injected With White Spot Syndrome Virus

Publicado en Marine Biotechnology, 2003
Imagen

High frequency and large number of polymorphic Microsatellites in cultured shrimp, Penaeus (litopenaeus) vannamei [crustacea:decapoda] 

Publicado en Journal of Shellfish Research, Vol. 26, 2007
Imagen

Contributions To The International Marine Shrimp Environmental Genomics Initiative (Imsegi): Monitoring Ecosystem, Animals And Public Health, 2000–2006 

Publicado en Journal of Shellfish Research, Vol. 26, 2007 
Imagen

Abstracts presented at ‘The Shrimp Epigenome (ShrimpENCODE) sessions and ‘ONE HEALTH Epigenomics and Microbiomes: From Soil to People’ workshops,co-chaired by Dr. Acacia Alcivar-Warren and Dr. Kathy Tang, at the annual meetings of the National Shellfisheries Association (NSA) from 2018 to 2020

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Abstracts presented at the World Aquaculture Society meetings from 1993 to 2016 available soon, at sessions chaired by Dr. Acacia Alcivar-Warren.

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  • FUCOBI
    • Quienes somos
    • Objetivos
    • Miembros de FUCOBI
    • Galería
  • Becas
    • Proyectos para Estudiantes
  • UNA SALUD/ ONE HEALTH
    • mangroveENCODE >
      • Metilación de ADN y adaptación al estrés de salinidad.
      • Biodiversidad de Manglares de Ecuador
      • Proyecto sobre la Absorción de CO2 por los Manglares
      • Químicos Perturbadores Endócrinos (EDCs) en Manglares
    • shrimpENCODE >
      • Biodiversidad y Diversidad Genética del Camarón
      • TSV en Camarón
      • WSSV en Camarón
      • IHHNV en Camarón
      • Alérgenos de Camarón
      • Metales / Cadmio en Camarón
      • Biodiversidad y Diversidad Genética Pescado
      • Diversidad Genética de la Concha
      • Diversidad Genética del Cangrejo
      • Proyecto de Epigénoma del Camarón
      • Quimicos Perturbadores Endocrinos / EDCs en Camarón
    • childrenENCODE >
      • Shrimp Scampi
      • Somos lo que Comemos
      • Malformaciones Congénitas (Metales y COPs)
      • Diabetes y EDCs (metales y COPs)
      • Cancer y EDCs (metales y COPs)
      • Aprenda sobre los Contaminantes que afectan a las Personas
      • Genes que causan Alergias en Humanos
      • Resistencia a Antibióticos y la Industria Avícola
  • Contacto
  • Eventos
    • Próximos Eventos
    • Eventos Anteriores
    • Expedición científica
  • Publicaciones
  • Como puedes ayudar
  • Blog